The Special Assembly is one of the principal organs at most MUN conferences and just like the General Assembly all of the members of the United Nations are equal and represented. The Special Assembly debates issues directly connected to the theme of the conference. At JMUN, it consists of committees that debate different aspects of world problems directly related to the theme. In JMUN, these committees gather at the last day of the conference to debate the passed resolutions.
 

In JMUN, the best clauses of the passed resolutions will be selected by the delegates in the respective committees of the Special Assembly and sent to the Special Assembly Plenary Session. These clauses form one big resolution on the theme, which will be debated and voted at the plenary session. The committees of the Special Assembly are:

 

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SA1 Drugs & Crime

• Attending to the threats of nuclear weapon usage during times of conflict.

• Minimizing the criminal effects of political polarization during times of election

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SA2 Education

• Examining the effects of political conflict and turmoil on the education system in Africa.

• Addressing the issue of women's rights in a country governed by the Taliban 

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SA3 Health

• Impeding the issue of cyber attacks on patient and individual data within healthcare systems.

• Tackling the healthcare threats of the monkeypox virus.​​

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SA4 Sustainability

• Confronting the effects of climate change and extreme weather patterns on agricultural production rates.

• Combating the issue of sustainable development after war and destruction

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SA5 Cyber Crimes

• Limiting data exploitation of individuals during times of democratic elections.

• Regulating AI usage in political propaganda.

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SA6 Gender Affairs

• Taking measures on the issue of gender bias in healthcare systems.

• Addressing the gender pay gap in less economically developed countries.